Research Focus

The SSABMI program has strong focus on the development of biomedical informatics methods with high (but not exclusive) priority for applications in HIV.

Publication list

SSABMI trainees are listed in bold

N. Ngandu, H. Bredell, C. M. Gray, C. Williamson, C. Seoighe, and the HIVNET028 Study Team,"CTL response to HIV-1 subtype C is poorly predicted by known epitope motifs", AIDS Research and Human Retroviruses, in press.

V.B. Bajic, S.L. Tan, A. Christoffels, C. Schönbach, L. Lipovich, L. Yang, O. Hofmann, A. Kruger, W. Hide, C. Kai, J. Kawai, D. A. Hume, P. Carninci, Y. Hayashizaki, "Mice and Men: Their Promoter Properties", PLOS Genetics, 2006, 2(4): e54 (download reference)

C. Seoighe; F. Ketwaroo; V. Pillay; K. Scheffler; N. Wood; R. Duffet, M. Zvelebil, N. Martinson, J. McIntyre, L. Morris, W. Hide, "A Model of Directional Selection Applied to the Evolution of Drug Resistance in HIV-1", Molecular Biology and Evolution, 2007, in press.

The Fantom Consortium et. al. (A. Kruger) , “The Transcriptional Landscape of the Mammalian Genome”, Science,  309, (2005), 1559-1563.

This work supported by the NIH/Fogarty International Center under grant D43 TW00699